Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs41299206 chr10:1120236 T/C 1.75E-13 133 42.03 70.63 17.1 KM Plot
TGCT rs41320045 chr4:154720615 A/T 1.65E-5 134 56.7 49.93 39.38 KM Plot
TGCT rs4141937 chr6:41341253 G/T 9.31E-7 132 45.1 25.77 11.53 KM Plot
TGCT rs4147775 chr5:1816431 G/C 5.54E-6 134 42.27 41.97 24.73 KM Plot
TGCT rs414902 chr17:39365542 T/G 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs41508750 chr12:129276658 A/AC 1.44E-5 133 29.53 44.28 42.1 KM Plot
TGCT rs4246257 chr12:107062329 C/T 0.000103 134 48.87 38.2 28.8 KM Plot
TGCT rs424830 chr17:39339765 A/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4264754 chr3:172533919 T/C 5.03E-5 134 42.03 41.92 47.38 KM Plot
TGCT rs4275010 chr5:1798203 C/T 4.19E-7 132 42.27 48.4 20.6 KM Plot
TGCT rs4275715 chr12:107062246 C/T 0.000103 134 48.87 38.2 28.8 KM Plot
TGCT rs4277951 chr5:1798022 G/T 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs4283459 chr2:54824849 C/T 7.1E-5 130 46.3 45.83 22.42 KM Plot
TGCT rs4296838 chr5:1798410 G/A 1.84E-6 133 42.27 48.4 19.5 KM Plot
TGCT rs4296839 chr5:1798413 G/A 1.84E-6 133 42.27 48.4 19.5 KM Plot